A fresh investigation is being launched into Centrelink’s controversial “robo-debt” recovery program, following claims from a whistleblower of serious failures.

The welfare agency has been under fire for its automated debt recovery scheme for more than 18 months, after scores of people were incorrectly targeted in a data-matching blitz on supposed over-payments.

Debt recovery notices were sent to 20,000 welfare recipients who were later found to owe less or even nothing.

Independent federal MP Andrew Wilkie has secured agreement from the commonwealth ombudsman to launch another investigation into the robo-debt program.

Mr Wilkie is concerned people who provide pay slips rather than bank statements might be incurring higher debts, believing the system does not factor in gross versus net income.

He is also worried people are receiving double or triple debts because one employer has been recorded under several different names.

Mr Wilkie has pushed for the new investigation. Photo: AAP

Mr Wilkie restated his calls for the “deeply flawed” program to be shut down and replaced.

“The fact is that the robo-debt system should have been shut down a long time ago,” he said on Wednesday.

“But instead the government has continued to let it loose on everyday Australians, saddling them with nonsensical and often incorrect debts, sometimes in the tens of thousands of dollars.”

The ombudsman responded to Mr Wilkie on Tuesday, agreeing to investigate his complaint and seeking further information, including copies of debt notices the MP offered up to back his claims.

The Department of Human Services has been contacted for comment.

Mr Wilkie said nobody disagreed with asking Centrelink clients who had been genuinely overpaid to hand the money back.

“You do need a system but it’s got to work. This system doesn’t work and it can’t be made to work,” he said.

-AAP